| Year | Title | Role | Notes |
|---|---|---|---|
| 1994 | North | Laura Nelson | |
| 1995 | Just Cause | Kate Armstrong | |
| 1996 | Manny & Lo | Amanda | limited release |
| If Lucy Fell | Emily | ||
| 1997 | Home Alone 3 | Molly Pruitt | |
| 1998 | The Horse Whisperer | Grace MacLean | |
| 1999 | My Brother the Pig | Cathy Kaldwell | |
| 2001 | The Man Who Wasn't There | Rachael 'Birdy' Abundas | |
| An American Rhapsody | Zsuzsi/Suzanne Sandor (at 15) | ||
| Ghost World | Rebecca | ||
| 2002 | Eight Legged Freaks | Ashley Parker | |
| 2003 | Girl with a Pearl Earring | Griet | Golden Globe Nomination |
| Lost in Translation | Charlotte | Golden Globe Nomination; BAFTA Win | |
| 2004 | In Good Company | Alex Foreman | |
| A Love Song for Bobby Long | Pursy Will | Golden Globe Nomination; limited release | |
| The SpongeBob SquarePants Movie | Mindy | voice | |
| The Perfect Score | Francesca Curtis | ||
| 2005 | Match Point | Nola Rice | Golden Globe Nomination |
| The Island | Jordan Two Delta/Sarah Jordan | ||
| 2006 | The Prestige | Olivia Wenscombe | |
| The Black Dahlia | Katherine 'Kay' Lake | ||
| Scoop | Sondra Pransky | ||
| A Good Woman | Meg Windermere | limited release | |
| 2007 | The Nanny Diaries | Annie Braddock | |
| 2008 | The Other Boleyn Girl | Mary Boleyn | completed |
| Vicky Cristina Barcelona | Cristina | post-production | |
| He's Just Not That Into You | Unknown | post-production | |
| Mary Queen of Scots | Mary I of Scotland | pre-production | |
| 2009 | The Spiri | Silken Floss | filming |
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